Code and Programs
Here I share code and programs that I produced over the years and thought could be useful to others. I try to have it well documented but will not provide any garantuees.
AnaCoDa - Analyzing Codon Data
AnaCoDa is an R package for estimating biologically relevant parameters such as mutation bias, selection for translation efficiency, or ribosome pausing times and protein synthesis rate from sequence data alone. The package also allows for the classification of genes based on these parameters. You can install the package from CRAN and find it on OMICTools. A vignette describing how to use the package can be found here.